Time-resolved PCA of ‘droplet impedance’identifies DNA hybridization at nM concentration
Abstract
We have developed a droplet-based non-Faradaic impedance sensing (NFIS) scheme for label-free, selective detection of short strands of DNA molecules suspended in solution. The frequency-resolved impedance of microliter-sized droplets evaporating on the superhydrophobic surface of the biosensor is monitored through several incubation/heating cycles, providing a time-resolved fingerprint of the analyte under consideration. To selectively differentiate target solutions with different levels of base-pair mismatch, the corresponding time-resolved signals are analyzed using a statistical technique called Principal Component Analysis (PCA). The approach allows us to selectively detect hybridization of 22-mer target DNA molecules at concentrations down to ∼2 nM in solution. The changes in the density of ‘trapped’ counterions as a result of hybridization are reflected in the corresponding impedance signals. The impedance readout permits label-free, indicator-less, and parallel detection of small volumes of target oligonucleotides in solution without inquiring any optical/magnetic tagging, reference electrode, analyte amplification, or probe immobilization.
Keywords
Selective differentiation; Principal component analysis; Non-Faradaic impedance; Droplet evaporation; DNA hybridization
DOI
10.1016/j.snb.2015.03.049
Date of this Version
2015
Recommended Citation
Ebrahimi, Aida and Alam, Muhammad Ashraful, "Time-resolved PCA of ‘droplet impedance’identifies DNA hybridization at nM concentration" (2015). Birck and NCN Publications. Paper 1670.
http://dx.doi.org/10.1016/j.snb.2015.03.049